| HDPenReg-package | Algorithms for lasso and fused-lasso problems. |
| HDPenReg-package, | Algorithms for lasso and fused-lasso problems. |
| coef.LarsPath | Compute coefficients |
| coeff | get coefficients at a given step. |
| computeCoefficients | Compute coefficients |
| EMcvfusedlasso | cross validation for EM fused-lasso |
| EMcvlasso | cross validation for 'EMlasso' |
| EMfusedlasso | EM algorithm for fused-lasso penalty |
| EMlasso | EM algorithm for lasso penalty |
| HDcvlars | cross validation |
| HDfusion | Fusion algorithm |
| HDlars | Lars algorithm |
| HDPenReg | Algorithms for lasso and fused-lasso problems. |
| LarsPath | Constructor of LarsPath class |
| LarsPath-class | Constructor of LarsPath class |
| listToMatrix | List to sparse matrix conversion |
| plot-method | plot methods for LarsPath object |
| plot-methods | plot methods for LarsPath object |
| plot.HDcvlars | plot cross validation mean square error |
| plotCoefficient | Plot of coefficients |
| predict.LarsPath | Prediction of response |
| simul | Simulate copy number data for a case-control study. |