Metrics for Benchmarking scRNA-Seq Batch Correction

Documentation for package ‘scPOP’ version 0.1.0

ari	Adjusted Rand Index
calc_sumZscore	Calc_sumZscore
compute_simpson_index	Compute the Local Inverse Simpson Index (LISI)
lisi	Compute Local Inverse Simpson's Index (LISI)
nmi	Normalized mutual information (NMI)
run_all_metrics	Running All Metrics
sceiad_subset_data	Example scRNA-seq data from the single cell eye in a disk(sceiad) the original data set this was pulled from can be found at this link 'https://hpc.nih.gov/~mcgaugheyd/scEiaD/colab/scEiaD_all_anndata_mini_ref.h5ad'
scPOP	scPOP: Metrics for Benchmarking scRNA-Seq Batch Correction
silhouette_width	batch_sil
stratified_sample	Generate a stratified subsample for a vector given a grouping