Last updated on 2025-08-03 01:49:44 CEST.
Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
---|---|---|---|---|---|---|
r-devel-linux-x86_64-debian-clang | 0.1.6 | 4.75 | 413.69 | 418.44 | OK | |
r-devel-linux-x86_64-debian-gcc | 0.2.0 | 3.66 | 425.48 | 429.14 | OK | |
r-devel-linux-x86_64-fedora-clang | 0.2.0 | 842.47 | OK | |||
r-devel-linux-x86_64-fedora-gcc | 0.2.0 | 881.39 | OK | |||
r-devel-windows-x86_64 | 0.1.6 | 7.00 | 229.00 | 236.00 | OK | |
r-patched-linux-x86_64 | 0.1.6 | 4.56 | 389.11 | 393.67 | OK | |
r-release-linux-x86_64 | 0.2.0 | 4.94 | 531.15 | 536.09 | OK | |
r-release-macos-arm64 | 0.2.0 | 357.00 | OK | |||
r-release-macos-x86_64 | 0.2.0 | 251.00 | ERROR | |||
r-release-windows-x86_64 | 0.2.0 | 9.00 | 385.00 | 394.00 | OK | |
r-oldrel-macos-arm64 | 0.2.0 | 367.00 | NOTE | |||
r-oldrel-macos-x86_64 | 0.2.0 | 317.00 | ERROR | |||
r-oldrel-windows-x86_64 | 0.2.0 | 9.00 | 480.00 | 489.00 | NOTE |
Version: 0.2.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘CodelistDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
==================================================
downloaded 565.6 MB
Quitting from CodelistDiagnostics.Rmd:28-56 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': rapi_startup: Failed to open database: {"exception_type":"IO","exception_message":"Could not write file \"/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/Rtmpow2WbY/synpuf-1k_5.3_1.3.duckdb\": No space left on device","errno":"28"}
---
Backtrace:
▆
1. ├─DBI::dbConnect(...)
2. ├─DBI::dbConnect(...)
3. │ └─duckdb (local) .local(drv, ...)
4. │ └─duckdb:::path_normalize(dbdir)
5. ├─CDMConnector::eunomiaDir("synpuf-1k", "5.3")
6. │ ├─DBI::dbConnect(duckdb::duckdb(datasetLocation))
7. │ └─duckdb::duckdb(datasetLocation)
8. │ ├─methods::new(...)
9. │ │ ├─methods::initialize(value, ...)
10. │ │ └─methods::initialize(value, ...)
11. │ └─duckdb:::rethrow_rapi_startup(dbdir, read_only, config, environment_scan)
12. │ ├─rlang::try_fetch(...)
13. │ │ ├─base::tryCatch(...)
14. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
15. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
16. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
17. │ │ └─base::withCallingHandlers(...)
18. │ └─duckdb:::rapi_startup(dbdir, readonly, configsexp, environment_scan)
19. ├─base::.handleSimpleError(...)
20. │ └─rlang (local) h(simpleError(msg, call))
21. │ └─handlers[[1L]](cnd)
22. │ └─duckdb:::rethrow_error_from_rapi(e, call)
23. │ └─rlang::abort(msg, call = call)
24. │ └─rlang:::signal_abort(cnd, .file)
25. │ └─base::signalCondition(cnd)
26. └─base (local) `<fn>`(`<rlng_rrr>`)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'CodelistDiagnostics.Rmd' failed with diagnostics:
error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': rapi_startup: Failed to open database: {"exception_type":"IO","exception_message":"Could not write file \"/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/Rtmpow2WbY/synpuf-1k_5.3_1.3.duckdb\": No space left on device","errno":"28"}
--- failed re-building ‘CodelistDiagnostics.Rmd’
--- re-building ‘CohortDiagnostics.Rmd’ using rmarkdown
--- finished re-building ‘CohortDiagnostics.Rmd’
--- re-building ‘DatabaseDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
==================================================
downloaded 565.6 MB
Quitting from DatabaseDiagnostics.Rmd:26-40 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': rapi_startup: Failed to open database: {"exception_type":"IO","exception_message":"Could not write file \"/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/RtmpIC3JPE/synpuf-1k_5.3_1.3.duckdb\": No space left on device","errno":"28"}
---
Backtrace:
▆
1. ├─DBI::dbConnect(...)
2. ├─DBI::dbConnect(...)
3. │ └─duckdb (local) .local(drv, ...)
4. │ └─duckdb:::path_normalize(dbdir)
5. ├─CDMConnector::eunomiaDir("synpuf-1k", "5.3")
6. │ ├─DBI::dbConnect(duckdb::duckdb(datasetLocation))
7. │ └─duckdb::duckdb(datasetLocation)
8. │ ├─methods::new(...)
9. │ │ ├─methods::initialize(value, ...)
10. │ │ └─methods::initialize(value, ...)
11. │ └─duckdb:::rethrow_rapi_startup(dbdir, read_only, config, environment_scan)
12. │ ├─rlang::try_fetch(...)
13. │ │ ├─base::tryCatch(...)
14. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
15. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
16. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
17. │ │ └─base::withCallingHandlers(...)
18. │ └─duckdb:::rapi_startup(dbdir, readonly, configsexp, environment_scan)
19. ├─base::.handleSimpleError(...)
20. │ └─rlang (local) h(simpleError(msg, call))
21. │ └─handlers[[1L]](cnd)
22. │ └─duckdb:::rethrow_error_from_rapi(e, call)
23. │ └─rlang::abort(msg, call = call)
24. │ └─rlang:::signal_abort(cnd, .file)
25. │ └─base::signalCondition(cnd)
26. └─base (local) `<fn>`(`<rlng_rrr>`)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'DatabaseDiagnostics.Rmd' failed with diagnostics:
error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': rapi_startup: Failed to open database: {"exception_type":"IO","exception_message":"Could not write file \"/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/RtmpIC3JPE/synpuf-1k_5.3_1.3.duckdb\": No space left on device","errno":"28"}
--- failed re-building ‘DatabaseDiagnostics.Rmd’
--- re-building ‘PhenotypeDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
==================================================
downloaded 565.6 MB
--- finished re-building ‘PhenotypeDiagnostics.Rmd’
--- re-building ‘PhenotypeExpectations.Rmd’ using rmarkdown
--- finished re-building ‘PhenotypeExpectations.Rmd’
--- re-building ‘PopulationDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
==================================================
downloaded 565.6 MB
Quitting from PopulationDiagnostics.Rmd:26-48 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': rapi_startup: Failed to open database: {"exception_type":"IO","exception_message":"Could not write file \"/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/Rtmptt8j5w/synpuf-1k_5.3_1.3.duckdb\": No space left on device","errno":"28"}
---
Backtrace:
▆
1. ├─DBI::dbConnect(...)
2. ├─DBI::dbConnect(...)
3. │ └─duckdb (local) .local(drv, ...)
4. │ └─duckdb:::path_normalize(dbdir)
5. ├─CDMConnector::eunomiaDir("synpuf-1k", "5.3")
6. │ ├─DBI::dbConnect(duckdb::duckdb(datasetLocation))
7. │ └─duckdb::duckdb(datasetLocation)
8. │ ├─methods::new(...)
9. │ │ ├─methods::initialize(value, ...)
10. │ │ └─methods::initialize(value, ...)
11. │ └─duckdb:::rethrow_rapi_startup(dbdir, read_only, config, environment_scan)
12. │ ├─rlang::try_fetch(...)
13. │ │ ├─base::tryCatch(...)
14. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
15. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
16. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
17. │ │ └─base::withCallingHandlers(...)
18. │ └─duckdb:::rapi_startup(dbdir, readonly, configsexp, environment_scan)
19. ├─base::.handleSimpleError(...)
20. │ └─rlang (local) h(simpleError(msg, call))
21. │ └─handlers[[1L]](cnd)
22. │ └─duckdb:::rethrow_error_from_rapi(e, call)
23. │ └─rlang::abort(msg, call = call)
24. │ └─rlang:::signal_abort(cnd, .file)
25. │ └─base::signalCondition(cnd)
26. └─base (local) `<fn>`(`<rlng_rrr>`)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'PopulationDiagnostics.Rmd' failed with diagnostics:
error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': rapi_startup: Failed to open database: {"exception_type":"IO","exception_message":"Could not write file \"/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/Rtmptt8j5w/synpuf-1k_5.3_1.3.duckdb\": No space left on device","errno":"28"}
--- failed re-building ‘PopulationDiagnostics.Rmd’
--- re-building ‘ShinyDiagnostics.Rmd’ using rmarkdown
--- finished re-building ‘ShinyDiagnostics.Rmd’
SUMMARY: processing the following files failed:
‘CodelistDiagnostics.Rmd’ ‘DatabaseDiagnostics.Rmd’
‘PopulationDiagnostics.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-x86_64
Version: 0.2.0
Check: installed package size
Result: NOTE
installed size is 5.2Mb
sub-directories of 1Mb or more:
doc 4.4Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.2.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘CodelistDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
==================================================
downloaded 565.6 MB
Quitting from CodelistDiagnostics.Rmd:28-56 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'CodelistDiagnostics.Rmd' failed with diagnostics:
File copy from /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//RtmpnG3Eog/synpuf-1k_5.3_1.3.duckdb to /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//RtmpnG3Eog/file2a1a79826cdb.duckdb failed!
--- failed re-building ‘CodelistDiagnostics.Rmd’
--- re-building ‘CohortDiagnostics.Rmd’ using rmarkdown
--- finished re-building ‘CohortDiagnostics.Rmd’
--- re-building ‘DatabaseDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
==================================================
downloaded 565.6 MB
Quitting from DatabaseDiagnostics.Rmd:26-40 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'DatabaseDiagnostics.Rmd' failed with diagnostics:
File copy from /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//RtmprHdHus/synpuf-1k_5.3_1.3.duckdb to /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//RtmprHdHus/file2fdf398952b0.duckdb failed!
--- failed re-building ‘DatabaseDiagnostics.Rmd’
--- re-building ‘PhenotypeDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
==================================================
downloaded 565.6 MB
--- finished re-building ‘PhenotypeDiagnostics.Rmd’
--- re-building ‘PhenotypeExpectations.Rmd’ using rmarkdown
--- finished re-building ‘PhenotypeExpectations.Rmd’
--- re-building ‘PopulationDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
==================================================
downloaded 565.6 MB
Quitting from PopulationDiagnostics.Rmd:26-48 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'PopulationDiagnostics.Rmd' failed with diagnostics:
File copy from /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmpy3Jg7q/synpuf-1k_5.3_1.3.duckdb to /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmpy3Jg7q/file317854df31ea.duckdb failed!
--- failed re-building ‘PopulationDiagnostics.Rmd’
--- re-building ‘ShinyDiagnostics.Rmd’ using rmarkdown
--- finished re-building ‘ShinyDiagnostics.Rmd’
SUMMARY: processing the following files failed:
‘CodelistDiagnostics.Rmd’ ‘DatabaseDiagnostics.Rmd’
‘PopulationDiagnostics.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-x86_64